DreEX0043440 @ danRer10
Exon Skipping
Gene
ENSDARG00000076306 | loxl3a
Description
lysyl oxidase-like 3a [Source:ZFIN;Acc:ZDB-GENE-070818-2]
Coordinates
chr14:5574680-5582087:-
Coord C1 exon
chr14:5581933-5582087
Coord A exon
chr14:5578282-5578452
Coord C2 exon
chr14:5574680-5574839
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTAACCCATGGCAGATG
3' ss Score
6.39
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTATGGGTCCCATCTACATGAATGAGGTCCAGTGTGGTGGGGATGAGAAGAGTCTGTGGGACTGTCCTCATCAGAGTATCACTGCTGAAGACTGCAAACACACGGAGGACGCCTCTGTAATCTGCAACATTCCCTACATGGGCTTCGAGAAACTG
Seq A exon
ATGCGGCTGACTGGGGGTCGGACGCGGTTGGAGGGGAGGGTGGAGCTGCTGCTTCCTGCAGGCGGTGGGGTGAGGGACTGGGGTTTGATCTGTGGGGACGGATGGACGTCTCGGGAGGCCATGGTAGTGTGCAGACAGCTGGGGTTGGGACATGCCAGCAGTGGCCTGAGA
Seq C2 exon
GAAACATGGTACTGGGACAGCAGTAATGTGACGGAGATGGTGATGAGTGGAGTCAAGTGTAAGGGAGATGAGATGACCTTAACCGACTGTCAGCATCATTCTGTCGTCAGCTGCAAAAGAGCTGGAGCGCAGTTTTCCGCTGGCGTCATTTGCTCGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076306-'8-12,'8-9,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(50.0=93.0)
C2:
PF0053013=SRCR=PD(48.1=94.4)
Main Skipping Isoform:
ENSDART00000154992fB3611
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGGGATGAGAAGAGT
R:
AAACTGCGCTCCAGCTCTTTT
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]