DreEX0043442 @ danRer10
Exon Skipping
Gene
ENSDARG00000076306 | loxl3a
Description
lysyl oxidase-like 3a [Source:ZFIN;Acc:ZDB-GENE-070818-2]
Coordinates
chr14:5574680-5578452:-
Coord C1 exon
chr14:5578282-5578452
Coord A exon
chr14:5575282-5575454
Coord C2 exon
chr14:5574680-5574839
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGCATGCTAAGCCCTTGCAGTGG
3' ss Score
-0.66
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATGCGGCTGACTGGGGGTCGGACGCGGTTGGAGGGGAGGGTGGAGCTGCTGCTTCCTGCAGGCGGTGGGGTGAGGGACTGGGGTTTGATCTGTGGGGACGGATGGACGTCTCGGGAGGCCATGGTAGTGTGCAGACAGCTGGGGTTGGGACATGCCAGCAGTGGCCTGAGA
Seq A exon
TGGGGATCTGTCTGCAGATCCGTATGGTAGGGGGAAGGACGGATCACGAGGGTCGCTTGGAGGTTCAGATCAGTTCCAGATGGGGAACTATATGCAGCGACAATTGGACCACAAGAGAAGCCATGGTGGCATGCAGACAGTTAGGCCTCAAATACTGCCTGCATGCTATTACT
Seq C2 exon
GAAACATGGTACTGGGACAGCAGTAATGTGACGGAGATGGTGATGAGTGGAGTCAAGTGTAAGGGAGATGAGATGACCTTAACCGACTGTCAGCATCATTCTGTCGTCAGCTGCAAAAGAGCTGGAGCGCAGTTTTCCGCTGGCGTCATTTGCTCGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076306_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=93.0)
A:
PF0053013=SRCR=PD(1.8=1.9),PF0053013=SRCR=PU(47.5=92.3)
C2:
PF0053013=SRCR=PD(48.1=94.4)
Main Inclusion Isoform:
ENSDART00000054866fB3612
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTGGGGTTTGATCTGT
R:
CAAATGACGCCAGCGGAAAAC
Band lengths:
251-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]