RnoEX0050362 @ rn6
Exon Skipping
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51343812-51348857:+
Coord C1 exon
chr15:51343812-51343963
Coord A exon
chr15:51346162-51346329
Coord C2 exon
chr15:51348695-51348857
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTGCTATCCACAGGTG
3' ss Score
11.4
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGATTGGGCCCATCCACCTCAACGAGGTCCAGTGCACAGGGACAGAGAAGTCCATCATAGACTGCAAGCTCAACACAGAGTCGCAGGGCTGCAACCACGAGGAAGACGCCGGAGTGCGATGCAACATCCCCATCATGGGCTTCCAGAAAAAG
Seq A exon
GTGCGCCTGAATGGAGGCCGCAATCCCTATGAGGGTCGAGTGGAGGTACTAACAGAGAGAAATGGGTCCCTCGTGTGGGGGAATGTATGTGGCCAGAACTGGGGCATTGTGGAAGCCATGGTGGTCTGCCGGCAGCTAGGATTGGGCTTTGCCAGCAACGCCTTCCAG
Seq C2 exon
GAAACCTGGTACTGGCATGGAAATATCTTCGCCAACAAAGTGATCATGAGTGGAGTGAAGTGCTCAGGAACGGAGTTATCCCTGGCACACTGCCGCCATGACGAGGAGGTGGTCTGCCCCGAGGGTGGGGTGCAGTATGGTGCTGGAGTCGCCTGCTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758-'24-30,'24-29,25-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.3=80.4)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAGCTCAACACAGAGT
R:
GACTCCAGCACCATACTGCAC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]