DreEX6087851 @ danRer10
Exon Skipping
Gene
ENSDARG00000044010 | loxl2a
Description
lysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
Coordinates
chr10:20457018-20462690:-
Coord C1 exon
chr10:20462539-20462690
Coord A exon
chr10:20462263-20462430
Coord C2 exon
chr10:20457018-20457183
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTGACTATAACAGATA
3' ss Score
7.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAATGGGTCCGGTCCACATGAATGAGGTGGAGTGCTCTGGATTTGAGAAATCTCTCACTGACTGCTACTTTAATAATGATGCTCTGGGATGCAGTCATGAGGAGGACGCAGCTGTTCGCTGTAATGTACCTGCTATGGGCTTTCAGAAAAGG
Seq A exon
ATACGACTAAGTGGAGGAAGAAACCCATTTGAAGGACGTGTGGAAGTTCTCGCTGAGAAGAACGGTTCTCTCGTTTGGGGAACCGTTTGTAGTGAAAACTGGGGGATTATAGAGGCTATGGTGGTCTGCAGACAGCTGGGATTAGGCTTCGCCAGCCATGCGTTCCAG
Seq C2 exon
GAGACCTGGTACTGGGCTGGAGATGCGAATGCAGATAATGTTGTGATGAGTGGAGTCAGATGCTCAGGAACTGAGATGAGTCTTCCTCAGTGTCTTCATCACGGAAAACACATCAACTGCCCCAAAGGAGGAGGACGCTTTGCCGCTGGAGTCTCCTGCTCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044010-'6-11,'6-9,7-11=AN
Average complexity
A_S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.3=80.4)
A:
PF0053013=SRCR=PU(48.6=92.9)
C2:
PF0053013=SRCR=PD(49.5=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGGAGTGCTCTGGATT
R:
CCTTTGGGGCAGTTGATGTGT
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]