MmuEX6042419 @ mm9
Exon Skipping
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:70073189-70077782:+
Coord C1 exon
chr14:70073189-70073340
Coord A exon
chr14:70075483-70075650
Coord C2 exon
chr14:70077620-70077782
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTGCTACCTACAGGTG
3' ss Score
10.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGATTGGGCCCATCCATCTCAATGAAGTCCAGTGCACAGGGACTGAGAAGTCCATCATAGACTGCAAATTCAACACAGAGTCTCAAGGCTGCAACCATGAAGAAGATGCCGGGGTGCGATGCAACATCCCCATCATGGGTTTCCAGAAAAAG
Seq A exon
GTGCGCCTGAATGGAGGCCGCAATCCTTATGAGGGCCGAGTGGAGGTGCTAACAGAGAGAAATGGGTCCCTTGTTTGGGGGACTGTATGCGGCCAGAACTGGGGCATTGTGGAAGCCATGGTGGTCTGCCGGCAGCTAGGCCTGGGCTTTGCCAGCAATGCCTTTCAG
Seq C2 exon
GAGACCTGGTACTGGCATGGAAATATCTTCGCCAACAACGTGGTCATGAGTGGAGTGAAGTGCTCAGGAACGGAGCTGTCCCTAGCACACTGCCGCCATGACGAGGAGGTGGCCTGCCCCGAGGGCGGGGTGCGGTTTGGTGCTGGAGTCGCCTGCTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205-'10-12,'10-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.3=80.4)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGGCCCATCCATCTCAA
R:
AGTGTGCTAGGGACAGCTCC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: