GgaEX6024596 @ galGal3
Exon Skipping
Gene
ENSGALG00000000402 | LOXL2
Description
NA
Coordinates
chr22:1241791-1244656:+
Coord C1 exon
chr22:1241791-1241942
Coord A exon
chr22:1242077-1242244
Coord C2 exon
chr22:1244491-1244656
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTTTTGCCCTACAGCTG
3' ss Score
9.99
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCATGGGTCCAATCCATCTAAACGAAATCGACTGTACAGGATTTGAGAAATCCCTCACAGACTGCAAGTTCAACATGGAGTCGCAGGGCTGTAACCACGAGGAAGATGCTGCTGTGAGATGCAACGTTCCCGCGATGGGTTTCCAGAACCAG
Seq A exon
CTGCGCCTGGTTGGTGGTCGCAACCCATACGAGGGCCGGGTGGAGGTGCTGGCGGAACGCAATGGCACGCTGCGTTGGGGCACGGTCTGCAGCCAGGGATGGAGCACCGTGGAGGCCATGGTGGTGTGCAGGCAGCTGGGGCTGGGCTTTGCCAGCCATGCCTTCCAG
Seq C2 exon
GAAACCTGGTACTGGCATGGAGATGTCAGTGCTGACAGCGTGGTCATGAGTGGGGTCAAGTGCTCGGGGACGGAGATGTCCCTGGCCCACTGTCGTCATGATGGAGCTGACGTCTCCTGTCCTAGAGGAGGAGGTCGCTTTGGTGCTGGCGTGTCCTGCTCGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.3=80.4)
A:
PF0053013=SRCR=PU(48.6=92.9)
C2:
PF0053013=SRCR=PD(49.5=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCACAGACTGCAAGTTCA
R:
CCAAAGCGACCTCCTCCTCTA
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]