RnoEX0050370 @ rn6
Exon Skipping
Gene
ENSRNOG00000061373 | Loxl3
Description
lysyl oxidase-like 3 [Source:RGD Symbol;Acc:1311011]
Coordinates
chr4:113881339-113882074:+
Coord C1 exon
chr4:113881339-113881493
Coord A exon
chr4:113881659-113881826
Coord C2 exon
chr4:113881912-113882074
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTATGCCTCTACAGATC
3' ss Score
10.98
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCATGGGTGCCATCCACTTGAGTGAAGTTCGGTGCTCTGGCCAGGAACCCTCCCTTTGGAAATGCCCCTCTAAGAACATCACAGCTGAGGACTGTTCCCATAGCCAGGATGCAGCTGTCCGGTGCAACCTCCCCTACACTGGGGTGGAGACCAAG
Seq A exon
ATCCGACTCAGTGGGGGCCGCAGTCGATACGAAGGGCGAGTCGAGGTGCAAATAGGGGTACCTGGGCATCTACGCTGGGGCCTCATCTGTGGGGATGACTGGGGAACACTGGAGGCCATGGTGGCCTGTAGGCAACTTGGTCTTGGCTACGCCAACCACGGCCTGCAG
Seq C2 exon
GAGACCTGGTACTGGGACTCGGGGAATGTAACTGAGGTGGTGATGAGCGGAGTACGTTGCACAGGGTCTGAGCTGTCCCTGAACCAATGTGCTCACCACAACACCCACGTCACCTGCAAGAGGACAGGCACCCGCTTCACTGCAGGAGTCATCTGTTCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061373-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAAGTTCGGTGCTCTGG
R:
GGGTGTTGTGGTGAGCACATT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]