GgaEX0019962 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:113004-115359:+
Coord C1 exon
chr4_random:113004-113158
Coord A exon
chr4_random:114557-114730
Coord C2 exon
chr4_random:115197-115359
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCCGCTGCGTCTCTCCGCAGATT
3' ss Score
11.98
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGATGGGGCCCATCCACCTGAATGAGGTGCAGTGCCTGGGCACTGAGAAGTCCCTCTGGAGCTGCCCGTTCAAGAACATCACGCAGGAGGACTGCAAGCACACAGAGGACGCGGCCGTGCGCTGCAACATCCCCTACATGGGCTACGAGAACCTG
Seq A exon
ATTCGGCTGAGCGGGGGCCGCAGCCGCTTCGAGGGGCGCGTGGAGGTGGCGGTGGGGGCTGCAGAAGGGGACGAGCCGCGCTGGGGCCTGGTGTGCGGCGAAGGCTGGGGTACGCTGGAGGCGATGGTCGCCTGTCGCCAGCTGGGGCTGGGATTCGCTAACCACGGCTTACAA
Seq C2 exon
GAGACGTGGTACTGGGATGCCAGCAACGTGACAGAAATGGTGCTGAGTGGTGTGAAGTGCGCTGGCCATGAGCTGTCCCTGAGCCACTGCCAGCACCACGGCAGCAGCCTGAACTGCAGGAACACGGGAACGCGCTTCGCTGCCGGTGTCATCTGCTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'7-9,'7-7,8-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(50.0=93.1)
C2:
PF0053013=SRCR=PD(48.1=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATCACGCAGGAGGACT
R:
TTTCAGAGCAGATGACACCGG
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]