RnoEX6007403 @ rn6
Exon Skipping
Gene
ENSRNOG00000015727 | Loxl4
Description
lysyl oxidase-like 4 [Source:RGD Symbol;Acc:1308588]
Coordinates
chr1:261843039-261844871:-
Coord C1 exon
chr1:261844717-261844871
Coord A exon
chr1:261844023-261844190
Coord C2 exon
chr1:261843039-261843201
Length
168 bp
Sequences
Splice sites
3' ss Seq
CGCGACTCTGACTATTACAGGTG
3' ss Score
8.02
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGCTAGGGCCCATCCACCTGAGTGAAGTGCGCTGCAGGGGCTATGAGCAGACCATCGGCGACTGCCTTGCCCTAGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGACGCTGCTGTCAGGTGCAACATCCCTGACATGGGCTTCCAGAACAAG
Seq A exon
GTGCGCTTGGCTGGTGGGCGCAACTCGGAAGAGGGCGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGCTGGGGGACTGTATGCAGTGACCACTGGGGGCTCACTGAAGCCATGGTGACCTGTCGGCAACTCGGTCTGGGATTTGCCAACTTTGCTATCAAG
Seq C2 exon
GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTTCAGCAGTGTCAGAGGCATGGGCCTGTGCACTGCTCCCACGGCTCGGGGCGCTTCTCGGCCGGCGTTGCCTGCATGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015727-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGCCCATCCACCTGAG
R:
CTGCTGAAGGGCCATTTCTGT
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]