GgaEX6040670 @ galGal3
Exon Skipping
Gene
ENSGALG00000013090 | LOXL4
Description
NA
Coordinates
chr6:23682048-23682946:+
Coord C1 exon
chr6:23682048-23682202
Coord A exon
chr6:23682479-23682646
Coord C2 exon
chr6:23682791-23682946
Length
168 bp
Sequences
Splice sites
3' ss Seq
TAGCCCCTCTCTGCACACAGGTG
3' ss Score
8.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGGGGCCCATCCACATGAGTGAGGTGCGCTGCATTGGCCACGAGCGCTCCCTGGGTGAGTGCCGCTTCCAGGACGGTGAGCAGAGTGGGTGCCGGCACGATGACGACGCGGCCGTCCGCTGCCACGTACCCCACATGGACTTCCAGAGCCAG
Seq A exon
GTGCGCCTGGCTGGGGGCCGCAGCCCTGAGGAGGGCGTTGTGGAGGTGCTGGTGCCAGTGCAGGGCAGGCTGCAGTGGGGTGCAGTGTGTGGAGCTCAGTGGGGGCTCAACGAAGCCATGGTGGTCTGCAGGCAGCTGGGGTTGGGCTTTGCCAGCCATGCCCTACAG
Seq C2 exon
GAGACCTGGTACTGGGCAGGCAGCCCCGACGCCTCGCAGGTGCTGATGAGTGGGGTGCGCTGCACGGGCACAGAGCTGGCCCTGCAGCAGTGCCAGCGCCACGGCCCCGTGCACTGCCCCACTGGCGGGGGACGCTTCTCGGCAGGGGTCACTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013090-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.5=92.9)
C2:
PF0053013=SRCR=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGACGGTGAGCAGAG
R:
AAGTGACCCCTGCCGAGAAG
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]