MmuEX6032959 @ mm9
Exon Skipping
Gene
ENSMUSG00000025185 | Loxl4
Description
lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]
Coordinates
chr19:42676663-42678499:-
Coord C1 exon
chr19:42678345-42678499
Coord A exon
chr19:42677677-42677844
Coord C2 exon
chr19:42676663-42676825
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCTGACTATTGCAGGTG
3' ss Score
10.3
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG
Seq A exon
GTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGGTCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACTTGGTCTGGGATTTGCCAACTTTGCTCTCAAG
Seq C2 exon
GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025185-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGAGGTGCGCTGC
R:
CCATGTCTCTGACACTGCTGC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: