HsaEX0036166 @ hg19
Exon Skipping
Gene
ENSG00000138131 | LOXL4
Description
lysyl oxidase-like 4 [Source:HGNC Symbol;Acc:17171]
Coordinates
chr10:100015334-100017561:-
Coord C1 exon
chr10:100017407-100017561
Coord A exon
chr10:100016537-100016704
Coord C2 exon
chr10:100015334-100015496
Length
168 bp
Sequences
Splice sites
3' ss Seq
CACACCCCTCGCCATTGCAGGTG
3' ss Score
9.51
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGCTAGGGCCCATCCACCTGAGTGAGGTGCGCTGCAGGGGATATGAGCGGACCCTCAGCGACTGCCCTGCCCTGGAAGGGTCCCAGAATGGTTGCCAACATGAGAATGATGCTGCTGTCAGGTGCAATGTCCCTAACATGGGCTTTCAGAATCAG
Seq A exon
GTGCGCTTGGCTGGTGGGCGTATCCCTGAGGAGGGGCTATTGGAGGTGCAGGTGGAGGTGAACGGGGTCCCACGCTGGGGGAGCGTGTGCAGTGAAAACTGGGGGCTCACCGAAGCCATGGTGGCCTGCCGACAGCTCGGCCTGGGTTTTGCCATCCATGCCTACAAG
Seq C2 exon
GAAACCTGGTTCTGGTCGGGGACGCCAAGGGCCCAGGAGGTGGTGATGAGTGGGGTGCGCTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGCCAGAGGCACGGGCCGGTGCACTGCTCCCACGGTGGCGGGCGCTTCCTGGCTGGAGTCTCCTGCATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138131_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGGTCCCAGAATGGTT
R:
TCCATGCAGGAGACTCCAG
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)