BtaEX6100124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020895 | LOXL4
Description
Bos taurus lysyl oxidase-like 4 (LOXL4), mRNA. [Source:RefSeq mRNA;Acc:NM_174384]
Coordinates
chr26:19210423-19212686:-
Coord C1 exon
chr26:19212532-19212686
Coord A exon
chr26:19211632-19211799
Coord C2 exon
chr26:19210423-19210585
Length
168 bp
Sequences
Splice sites
3' ss Seq
CACACCCCTGACCATTGCAGGTG
3' ss Score
8.48
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CGCTGGGGCCCATCCACCTGAGTGAAGTACGCTGCAGGGGATATGAGCGGACCCTCAGCGATTGCCCTTCCCTGGAAGGCTCCCAGAATGGTTGCCAACATGACAATGATGCTGCCGTGAGATGCAACATCCCTAACATGGGCTTCCAGGACCAG
Seq A exon
GTGCGTCTGGCTGGTGGGCGCAGCCCCGAGGAGGGGGTGGTGGAGGTGCAGGTGGAGGTGAACGGCGTCCAGCGCTGGGGGGCCGTGTGCAGTGACCACTGGGGCCTCAGCGAAGCCATGGTGGCCTGTCGACAGCTTGGCCTGGGCTTTGCCAGCCATGCCATCAAG
Seq C2 exon
GACACCTGGTACTGGCAGGGGACGCCGGGAGCCAGAGAAGTGGTCATGAGCGGGGTGCATTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGTCAGAGGCACGGGCCAGTGCACTGCTCCCACGGCACGGGGCGCTTCTCAGCCGGAGTCTCCTGCACAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020895-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCTCCCAGAATGGTTG
R:
TGTCTGTGCAGGAGACTCCG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]