DreEX6062861 @ danRer10
Exon Skipping
Gene
ENSDARG00000025089 | loxl4
Description
lysyl oxidase-like 4 [Source:ZFIN;Acc:ZDB-GENE-080722-19]
Coordinates
chr13:40071326-40076673:-
Coord C1 exon
chr13:40076519-40076673
Coord A exon
chr13:40073473-40073640
Coord C2 exon
chr13:40071326-40071488
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGCGCGTGTTTGTGTTTCAGGTG
3' ss Score
12.28
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGACGGGACCGATCCACATGAACTCAGTGCGGTGCGCGGGCACAGAGCGCTCTATTTTAGATTGTTTCTTCCAGGACGTCCAGCCCTGGACCTTCAAACACAACCGGGACGCTTCTGTCAAGTGCTACGTTCCTAAGACGGGTGTGGAGAATACG
Seq A exon
GTGCGTCTGGCGGGCGGCCGGGACCCAGCAGAGGGTCGCGTGGAAGTGCTCATGGAGGACGGCGGTCGAAAACATTGGGGGACGATCTGCAGTGAGAACTGGGGAATAAATGAAGCCATGGTGGTGTGCAGACAGCTGGGCTTTGGTTTCGCTGCTCGCGCCCATCAG
Seq C2 exon
GAAACATACTATTGGCAAGGAGACCCAGCGGCAGAGGAAGTGGTGTTGAGTGGCGCTCATTGTGTGGGAACAGAAATGTCAATCCAGCAGTGCCGTCGCAACAGTTATGTCCACTGTCCTCGAGGAGGCGGAGCCAAAGCAGCGGGCGTCACCTGTTCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025089-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACATGAACTCAGTGCGG
R:
TGGACATAACTGTTGCGACGG
Band lengths:
257-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]