BtaEX6042976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018578 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
chr11:10087131-10087996:+
Coord C1 exon
chr11:10087131-10087285
Coord A exon
chr11:10087532-10087699
Coord C2 exon
chr11:10087834-10087996
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTCCATTGCGTCACTACAGATC
3' ss Score
8.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCATGGGTGCCATCCATTTAAGTGAAGTTAGATGCTCTGGACAGGAACTCTCTCTCTGGAAGTGCCCCCACAAGAACATCACAGCTGAAGACTGCTCGCATAGCCAAGATGCTGGCGTCCGATGCAACCTGCCCTACACTGGGGTAGAGACCAAG
Seq A exon
ATCCGACTCAGCGGGGGCCGCAGCCGACATGAAGGGCGAGTCGAAGTGCAAATAGGGGGACCTGGGTCCTTTCGCTGGGGCCTCATCTGTGGAGATGACTGGGGAACACTGGAGGCCATGGTTGCCTGCAGGCAGCTTGGACTGGGCTATGCCAACCACGGCCTACAG
Seq C2 exon
GAGACCTGGTACTGGGATTCAGGAAATGTGACAGACGTGGTGATGAGTGGAGTGCGCTGCACAGGGGCTGAGCTGTCCCTGGACCAGTGTGCTCATCATGGCACCCATGTCACCTGCAAGAGGACAGGAAGCCGTTTTACTGCTGGAGTCATTTGTTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018578-'11-17,'11-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(49.1=92.9)
C2:
PF0053013=SRCR=PD(49.1=94.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCCCCCACAAGAACATC
R:
TGACTCCAGCAGTAAAACGGC
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]