GgaEX0019963 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:113004-115359:+
Coord C1 exon
chr4_random:113004-113158
Coord A exon
chr4_random:114869-115024
Coord C2 exon
chr4_random:115197-115359
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGCCCCAGGGCTTCCCGCAGATC
3' ss Score
3.34
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGATGGGGCCCATCCACCTGAATGAGGTGCAGTGCCTGGGCACTGAGAAGTCCCTCTGGAGCTGCCCGTTCAAGAACATCACGCAGGAGGACTGCAAGCACACAGAGGACGCGGCCGTGCGCTGCAACATCCCCTACATGGGCTACGAGAACCTG
Seq A exon
ATCCGCCTGGCCGGGGGGAGGACAGAGTTCGAGGGCCGCGTGGAGGTGAAGCGCGGCAGTAAGTGGGGCACTGTGTGCAGCGACGGCTGGACCACCAAGGAGGCGATGGTGGTCTGTCGCCAGCTGGGCCTGGGCTACTCCCTGCACGCGGTGACG
Seq C2 exon
GAGACGTGGTACTGGGATGCCAGCAACGTGACAGAAATGGTGCTGAGTGGTGTGAAGTGCGCTGGCCATGAGCTGTCCCTGAGCCACTGCCAGCACCACGGCAGCAGCCTGAACTGCAGGAACACGGGAACGCGCTTCGCTGCCGGTGTCATCTGCTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'7-9,'7-8,9-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PD(1.8=1.9),PF0053013=SRCR=PU(47.1=92.3)
C2:
PF0053013=SRCR=PD(48.1=94.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATCACGCAGGAGGACT
R:
TTTCAGAGCAGATGACACCGG
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]