DreEX0043451 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15196167-15223423:+
Coord C1 exon
chr13:15196167-15196321
Coord A exon
chr13:15211624-15211779
Coord C2 exon
chr13:15223264-15223423
Length
156 bp
Sequences
Splice sites
3' ss Seq
GGCGTAGGCTGTGTTTGCAGGTG
3' ss Score
4.4
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGTTGGGGCCTATCCATATGAATGAGGTGCAGTGCACTGGTAATGAGCGCTCACTGTGGAGCTGCCGCTATAAAAACATCACAGCGGAGGACTGCAAACACACTGAAGACGCTTCAGTCCGCTGCAATGTTCCGTACATGGGCTACGAAAAGACG
Seq A exon
GTGCGTCTGTCAGGCGGGCGTTCTCCGTATGAGGGGCGTGTGGAAGTGCGGGTGGGGCAGCGGTGGGGCAGTGTGTGCAGTGAGGGCTGGAGCACTAAAGAGGCCATGGTGCTATGCAGACAGCTAGGGCTCGGTTTCAGCATGCATGCTATTACT
Seq C2 exon
GAAACGTGGTATTGGGACAGCAGTAATGTGACAGACATGGTCATGAGTGGAGTGAAGTGTACCGGTGATGAGATGTCCATCAGCCAATGCCAACACCACAGAACTGTAAACTGCCAAAAAGCAGCCGCGCGTTTTGCTGCTGGAGTGATCTGCTCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563_MULTIEX1-2/3=C1-3
Average complexity
ME(1-2[98=98])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PD(1.8=1.9),PF0053013=SRCR=PU(47.5=92.3)
C2:
PF0053013=SRCR=PD(50.5=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACATCACAGCGGAGGACT
R:
TCTGAGCAGATCACTCCAGCA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]