DreEX0043450 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15196167-15223423:+
Coord C1 exon
chr13:15196167-15196321
Coord A exon
chr13:15203767-15203937
Coord C2 exon
chr13:15223264-15223423
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTGTGCCATGCTCAGGTG
3' ss Score
6.14
5' ss Seq
CAAGTAGGA
5' ss Score
4.46
Exon sequences
Seq C1 exon
GGTTGGGGCCTATCCATATGAATGAGGTGCAGTGCACTGGTAATGAGCGCTCACTGTGGAGCTGCCGCTATAAAAACATCACAGCGGAGGACTGCAAACACACTGAAGACGCTTCAGTCCGCTGCAATGTTCCGTACATGGGCTACGAAAAGACG
Seq A exon
GTGCGTATCTTAGGGGGGCGAACACGATATGAGGGCCGCGTGGAGGTGTTGCACAGAGAAGCAGACGGGACGCTGCGCTGGGGCTTGATCTGTGGAGAAGGCTGGGGCACGCAAGAGGCCATGGTACTGTGCAGGCAGCTGGGCCTCGGGTATGCCAACCATGGCCTACAA
Seq C2 exon
GAAACGTGGTATTGGGACAGCAGTAATGTGACAGACATGGTCATGAGTGGAGTGAAGTGTACCGGTGATGAGATGTCCATCAGCCAATGCCAACACCACAGAACTGTAAACTGCCAAAAAGCAGCCGCGCGTTTTGCTGCTGGAGTGATCTGCTCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563_MULTIEX1-1/3=C1-3
Average complexity
ME(1-2[98=98])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
PF0053013=SRCR=PU(94.6=93.0)
C2:
PF0053013=SRCR=PD(50.5=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACATCACAGCGGAGGACT
R:
TCTGAGCAGATCACTCCAGCA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]