DreEX0043722 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48780290-48797818:+
Coord C1 exon
chr9:48780290-48780459
Coord A exon
chr9:48793345-48793568
Coord C2 exon
chr9:48797612-48797818
Length
224 bp
Sequences
Splice sites
3' ss Seq
TACTGATTTTCTTCACACAGGTG
3' ss Score
8.17
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTGGCGTGCCCTCGCTTATATTCTCCAACGGCAGAGACCTGCTGATCGCTGATGTTCATGGACACGGCTCTCAAACACTGGTTCAGTCCCAGAACAGAGGAGCCGCTGTTGGTGTGGATTTTCATTACCAGCTGCAAAGGGTCTTTTGGACGGACACAATCCAAAATAAG
Seq A exon
GTGTTTTCTGTGGATATGGACGGCTCGCGTCTGCAGGTGGTGCTGAACGTGTCGGTGGACTATCCCGAAAATCTGGCCGTGGACTGGGTGAACAATAAGCTGTATGTAGTGGAGGCCAGTGTCAACAGGATCGACATGGTGGACCTGGACGGCAGCAATCGGGTCACGCTGATCGCAGAGCACCTGGGAAACCCAAGAGGACTCGCGCTCGACCCGACCGTAGG
Seq C2 exon
GTATCTTTTCTTCTCTGACTGGGACACTCTGAATGGAGAGCCCGGTTTGGAAAGAGCCTACATGGACGGCACCAATCGCTATGGGATCATCAGGACCAAACTCGGCTGGCCTGCAGGAATCACTCTGGACCTCGAGGCCAAAAGAGTGTATTGGGTGGACAGTCGATATGATTACATCGAAACCACAACTTATGATGGGCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'10-15,'10-14,11-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(26.8=19.3)
A:
PF0005812=Ldl_recept_b=PD(68.3=37.3),PF0005812=Ldl_recept_b=WD(100=54.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=64.3),PF0005812=Ldl_recept_b=PU(51.2=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCAACGGCAGAGACCT
R:
CACTCTTTTGGCCTCGAGGTC
Band lengths:
299-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]