GgaEX0016201 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18267174-18270950:+
Coord C1 exon
chr7:18267174-18267343
Coord A exon
chr7:18269760-18269983
Coord C2 exon
chr7:18270744-18270950
Length
224 bp
Sequences
Splice sites
3' ss Seq
GTTATTTGTATTGTTTTCAGGTT
3' ss Score
8.58
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTGGTGTTGCATCAATCATTTTTTCCAATGGCCGTGATTTACTGATTGGAGATCTTCATGGAAGAAATTTTCGTACTCTGGTACAGTCACAGAATCGTGGAGTTGCAGTTGGAGTGGACTTCCACTTCTACCTGCATAGGATCTTTTGGACTGATACAGTGCAAGATAAG
Seq A exon
GTTTTTTCTATTAATATTGATGGCTCTGATTTCCAAGAAGTTTTAAATGTTTCAGTTGACACTCCTGAAAATCTAGCAGTGGATTGGGTTAACAATAAACTGTATGTGGTTGAGACCAGTGTGAACAGAATAGATATGGTCAACTTGGATGGAACAAACCGTGTCACTCTTATTGCTGAAAATCTGGGAAATCCTAGAGGAATAGCACTCGATCCAACTGTTGG
Seq C2 exon
TTACTTATTTTTCTCTGACTGGGATAGTCTGTCTGGTGATCCTAAAGTGGAAAGAGCCTTCATGGATGGCACAAACCGTCAGGATTTGATAAAAACAAAATTAGGCTGGCCTGCTGGAATAACTTTGGATATTGTATCAAAAAGGCTATACTGGGTTGACAGCCGATTTGATTACATCGAGACTGTAACTTATGATGGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(26.8=19.3)
A:
PF0005812=Ldl_recept_b=PD(68.3=37.3),PF0005812=Ldl_recept_b=WD(100=54.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=64.3),PF0005812=Ldl_recept_b=PU(51.2=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGTGATTTACTGATTGGA
R:
CGGCTGTCAACCCAGTATAGC
Band lengths:
307-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]