DreEX0043731 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48908543-48915937:+
Coord C1 exon
chr9:48908543-48908838
Coord A exon
chr9:48911257-48911923
Coord C2 exon
chr9:48915767-48915937
Length
667 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTCATATCATCGCAGGCA
3' ss Score
7.68
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGTGATCGGCGTAATGACTGTGGAGACAGCAGTGATGAGCAGGGCTGCACCTATCAGCCGTGTCAGCAGCATCAGTTCACCTGTCAGAACGGCCGCTGCATCTCCAGGGATTTCCTCTGTGATGGAGATAACGACTGCGGGGACGAGTCTGATGAGCTGGACCACCTGTGCAGGATGCCTGCGCCCACCTGCCCATCCGGACACTTCCGCTGCGACAACGGCAACTGTGTGCCGCAGAGCCAAGTGTGTGATAGAAATGACGACTGCAGCGACAACAGCGACGAGAAGGGCTGCG
Seq A exon
GCATTAACGAATGCACAGACCCATCAATGCACCACTGTGACCACAACTGCACCGACACACTGACCAGCTTCATCTGCACCTGTCGGCCCGGCTACCGCCTCATGTCTGACAACAAAACCTGCGACGACATCGACGAGTGCTCTGTCACACCCAGCGTCTGCAGTCAGGTCTGCGAAAACACCCTGGGCTCATACGTCTGCAAATGTGCTCCGGGATTCCTCCGTGAACCAGATGGTCACAGCTGCAGACAAAACAGCAACATCCACCCGTATTTAATCTTTAGCAACCGCTACTACCTGCGCAATCTGTCCACGGACGGAGAGGCCTATTCGCTCATCCTGCAGGGTCTGAGTAGCGTGGTGGCTCTGGATTTCGACCGCGTGGATAAACGCTTGTATTGGATCGATGTGAGCCGCAGAGTGCTGGAGCGAATGTTTTTTAACGGGACAGGCCGGGAGGCGGTGGTCAATGGGGTTTTGCATGGTGAAGGGCTGGCGGTCGACTGGATTGGGAGGAAGCTTTATTGGGTGGACAGTTTTCTGGATTGTCTGAAAGTGTCAGAGCTGGACGGACGCTTCGTGAGGAAGTTAGCTGAACACTGCGTCGATGATAATCACACATACTGCTTCCAAAATCCCAGAGCCGTCGTGCTGCATCCCAAATTTGG
Seq C2 exon
GTATGTGTACTGGACTGACTGGGGAGAAAGAGCGTTCATTGGTCGTGTTGGAATGGATGGAAATAACAAGTCTGCCATCATCACTACCAAGATCGAGTGGCCAAATGGTCTGACCATCGACTACACCAACGACAAACTCTACTGGTCTGATGCTCATCTCAACTACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'53-60,'53-59,54-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(43.2=16.0),PF0005713=Ldl_recept_a=WD(100=39.0),PF0005713=Ldl_recept_a=WD(100=37.0)
A:
PF126622=cEGF=WD(100=10.8),PF146701=FXa_inhibition=WD(100=16.1),PF0005812=Ldl_recept_b=WD(100=22.0),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCATCAGTTCACCTGT
R:
GGTCAGACCATTTGGCCACTC
Band lengths:
347-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]