DreEX0043745 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48891334-48897130:+
Coord C1 exon
chr9:48891334-48891534
Coord A exon
chr9:48894684-48894707
Coord C2 exon
chr9:48896888-48897130
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTTTTACATTTTTGCCCCAGGAT
3' ss Score
8.88
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
GTCCTCAGGGAGCAGAGTGTCAGTGTCCTTCAGAGGGCCGCTGGTATCTGGCCGACAACAAACACTGTATTCCTGACAATGGCACGCGCTGCCAGCCCGGGCAGTTTACTTGCATGAATGGCCGCTGTATCCGCTCACAGTGGAAATGCGACAATGATGATGACTGTGGAGATGGCAGTGATGAACTGGAAAGGGTCTGCG
Seq A exon
GATCCAAACATCATTTTGTTTTTG
Seq C2 exon
CATTTCACACCTGCGAGCCCACAGTGTTCACCTGTGGAAATGGTCGCTGTGTGCCGTATCATTACCGATGCGATCACTACAATGACTGCGGGGATAACAGCGATGAGACTGGCTGCATCTTCAGACCCTGCGACCCAAATACAGAGTTCTCCTGTAATAATGGCCGCTGCATTGCCAGGGAATACATCTGCAATGGAATAAACAATTGCTACGATAATGGGACCTCGGATGAACAGAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(59.5=28.9),PF0005713=Ldl_recept_a=WD(100=56.6)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=45.1),PF0005713=Ldl_recept_a=WD(100=48.8)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGGAGATGGCAGTGA
R:
CGCATCGGTAATGATACGGCA
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]