DreEX0043746 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48891334-48897130:+
Coord C1 exon
chr9:48891334-48891534
Coord A exon
chr9:48896746-48896778
Coord C2 exon
chr9:48896888-48897130
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTGTTGCATGCAGTCC
3' ss Score
7.85
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTCCTCAGGGAGCAGAGTGTCAGTGTCCTTCAGAGGGCCGCTGGTATCTGGCCGACAACAAACACTGTATTCCTGACAATGGCACGCGCTGCCAGCCCGGGCAGTTTACTTGCATGAATGGCCGCTGTATCCGCTCACAGTGGAAATGCGACAATGATGATGACTGTGGAGATGGCAGTGATGAACTGGAAAGGGTCTGCG
Seq A exon
TCCGACAAGCAGCAGCCTTTATTTCTCTCTCAG
Seq C2 exon
CATTTCACACCTGCGAGCCCACAGTGTTCACCTGTGGAAATGGTCGCTGTGTGCCGTATCATTACCGATGCGATCACTACAATGACTGCGGGGATAACAGCGATGAGACTGGCTGCATCTTCAGACCCTGCGACCCAAATACAGAGTTCTCCTGTAATAATGGCCGCTGCATTGCCAGGGAATACATCTGCAATGGAATAAACAATTGCTACGATAATGGGACCTCGGATGAACAGAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(59.5=28.9),PF0005713=Ldl_recept_a=WD(100=56.6)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=45.1),PF0005713=Ldl_recept_a=WD(100=48.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGGAGATGGCAGTGA
R:
CGCATCGGTAATGATACGGCA
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]