GgaEX0016215 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20268323-20269180:+
Coord C1 exon
chr7:20268323-20268526
Coord A exon
chr7:20268803-20268832
Coord C2 exon
chr7:20268938-20269180
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTATTTTACTTTTCATGCAGTAC
3' ss Score
5.7
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCCAGCTGGTGCGGAATGTCAGTGTCCATCTGAAGGTCGCTGGTATTTAGCCAATAATAACAAGCACTGCATTGTGGATAATGGTACCAGGTGTGACACTGGTTTCTTCACCTGCCTGAATGGACACTGCATCTCAGAGCGATGGAAATGTGACAACGACAATGACTGTGGTGATGGCAGTGATGAGTTGGAGAGTGTGTGTG
Seq A exon
TACGTTTTGCAGCTGTCTTTGCTCTGGCAG
Seq C2 exon
CTTTCCATACTTGTCAGCCAACAGCTTTTACCTGTGGTAATGGGCGATGTGTGCCCTATCATTACCGCTGTGATCACTACAACGACTGTGGAGACAATAGTGATGAGGCTGGCTGCTTATTCCGAACTTGTGACTCCCACACAGAATTTACTTGCAATAATGGAAGATGTATATCTCTTCAGTACGTCTGCAATGGAGTAAATAATTGTTACGATAATGGCACATCAGATGAGAGAAATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'45-47,'45-46,46-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(60.5=33.3),PF0005713=Ldl_recept_a=WD(100=56.5)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=45.1),PF0005713=Ldl_recept_a=WD(100=48.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGTGATGGCAGTGATG
R:
CGTTGTAGTGATCACAGCGGT
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]