GgaEX0016215 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18302980-18303837:+
Coord C1 exon
chr7:18302980-18303183
Coord A exon
chr7:18303460-18303489
Coord C2 exon
chr7:18303595-18303837
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTATTTTACTTTTCATGCAGTAC
3' ss Score
5.7
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCCAGCTGGTGCGGAATGTCAGTGTCCATCTGAAGGTCGCTGGTATTTAGCCAATAATAACAAGCACTGCATTGTGGATAATGGTACCAGGTGTGACACTGGTTTCTTCACCTGCCTGAATGGACACTGCATCTCAGAGCGATGGAAATGTGACAACGACAATGACTGTGGTGATGGCAGTGATGAGTTGGAGAGTGTGTGTG
Seq A exon
TACGTTTTGCAGCTGTCTTTGCTCTGGCAG
Seq C2 exon
CTTTCCATACTTGTCAGCCAACAGCTTTTACCTGTGGTAATGGGCGATGTGTGCCCTATCATTACCGCTGTGATCACTACAACGACTGTGGAGACAATAGTGATGAGGCTGGCTGCTTATTCCGAACTTGTGACTCCCACACAGAATTTACTTGCAATAATGGAAGATGTATATCTCTTCAGTACGTCTGCAATGGAGTAAATAATTGTTACGATAATGGCACATCAGATGAGAGAAATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'46-55,'46-54,47-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(60.5=33.3),PF0005713=Ldl_recept_a=WD(100=56.5)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=45.1),PF0005713=Ldl_recept_a=WD(100=48.8)
Main Inclusion Isoform:
ENSGALT00000017651fB1894
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGTGATGGCAGTGATG
R:
CGTTGTAGTGATCACAGCGGT
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]