DreEX0044082 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36965963-36968229:+
Coord C1 exon
chr5:36965963-36966082
Coord A exon
chr5:36967782-36967904
Coord C2 exon
chr5:36968107-36968229
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTCTCTCTCTCTCAGATA
3' ss Score
12.5
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ACATCAATGAATGTTTGGAACCGGATATCTGTCCTAATGAACAGTGTGAAAATACCCTTGGGTCCTATGAGTGTTTACCCTGCCAACCCGGATACCGGGCAGAGCGAGGAGTGTGTCATG
Seq A exon
ATATCGATGAGTGCAAGAAGCACGGTGTGTGTCTAAACGGCCGTTGCGAGAACTTGGCAGGATCTTATCGATGTCTGTGTAATGAGGGCTTTCTGCCCGAGGCTAACAGGAAAGGCTGCAGAG
Seq C2 exon
ACATCAATGAGTGTCAGGATAACCGGTTGTGTGCTAATGGTCACTGCATCAACACTGACGGGTCATTTCGCTGCCAGTGTTATGCTGGTTATCAGCCTACGCAAGAAGGAAGCCATTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'17-23,'17-22,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATGAATGTTTGGAACCGG
R:
TTCACAATGGCTTCCTTCTTGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]