RnoEX6006167 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221109222-221111306:+
Coord C1 exon
chr1:221109222-221109344
Coord A exon
chr1:221109480-221109602
Coord C2 exon
chr1:221111184-221111306
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGGGGTTCTTCCCTGCAGATA
3' ss Score
11.26
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACATCGACGAATGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTATCGCAGCCAGGGGGGCGGAGCCTGTCGTG
Seq A exon
ATATCAACGAATGCTCCGAGGGGAGCCCCTGCTCTCCTGGATGGTGTGAGAACCTCCCGGGCTCTTACCGTTGCACGTGTGCCCAGGGATACGAGCCCGCACTGGATGGCCTCAGTTGCATAG
Seq C2 exon
ACATGGATGAGTGTGAGACCGGGAACATATGCCACGATGGCATCTGCACGAACACACCAGGCTCCTTCCAGTGTCAGTGCCTCTCTGGCTATCATCTGTCAAGGGACCGGAGCCATTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'19-30,'19-26,20-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTCGCGACCCTAGCAC
R:
ACAATGGCTCCGGTCCCTT
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]