MmuEX6030816 @ mm10
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5751754-5753755:+
Coord C1 exon
chr19:5751754-5751876
Coord A exon
chr19:5752019-5752141
Coord C2 exon
chr19:5753633-5753755
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTAGCGTTCTTCCCTGCAGATG
3' ss Score
11.31
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG
Seq A exon
ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG
Seq C2 exon
ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-'23-32,'23-26,30-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCGCGACCCTAGCA
R:
CTCACAGCGGCTCCGATC
Band lengths:
237-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types