DreEX0045241 @ danRer10
Exon Skipping
Gene
ENSDARG00000001162 | matr3l1.1
Description
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
Coordinates
chr14:24778660-24781335:-
Coord C1 exon
chr14:24781239-24781335
Coord A exon
chr14:24779488-24780594
Coord C2 exon
chr14:24778660-24778721
Length
1107 bp
Sequences
Splice sites
3' ss Seq
CTTCAACATCTTTTTAACAGGTT
3' ss Score
8.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGCTTCCGGTTGAAAAGCAGGACAAGGAGAACGGTCTTCGCCAGAACCGCTGCTTTACCGATCTTCGTTGATTAATTCTTTATTCTGTCTTGCGTTG
Seq A exon
GTTAACAACAAAGACTGCTAATTTTGGCAGGACCTAAAAGGTCCAACACGACTGTGCACAATGTCTTATAATCCACCATACCGAAACCCTCAAGGGGACAAAGATGCACGAATCTATACCCGGGACTCGAGCGCTTACAGGTCAGGAATTAGGAGCACAACTCCGCACCGGACATCTTCATCCTCATCAGAACAGCCCGTATTCCCGCCGAATAAGGCATTGTCCTTTCTGCATAGCTGCGGACTGGATGCTGAAGATCTTCAAACTCTGGCCAAGCTTCCCGAGCATCTCATCACAACCGATACCCTTCCTGACCTTCTCACAGAAATCAAAAAGAAGAAATTGTCCCACACTTCTTCACCCAGGTCCAGTGTGCTCCCAGCCGCGTCGTCAGCTCGCTCCTGGGACGATAGGAGCCACGCTCAGTCGGTTGAGTATCCTTTAGATTTGCCTGCCCGTCAGTCGTATTCCCTTAATCGAGAGCAAGCCCAAACCTGGGATGACAACTGGGGAGATGTCCAGCAAACAAGCTCTCCAGCAGCATCAAGCTACGTTGTTGAGTATAACCATCTGAAAGAGAAAAAGTCATACTATGATGAACCGTCTTATCCCCCAGAACCATCAAGAGAAATGTCTTACTCTAACTATGGCAAAGAAGTTGGTCACTCGTCGCATTTTTCCAGCAGAGACGCCAGTCATTCCTCACATCTGTCCAGTAGGGACAGTCAATCCTCACGTCGGTCAAGCAGAGACCTCGGTCAGACCTCACAGCACTCCAGCAGATACATCAGTCAGTCCTCAGTACGGTCGAGTAGAGACGTCGCTCCATCCTCACACCTGTCTAGCAGAGATGTCGGAGTACATTCACACATCGCCCAACCTTCGCCCATGTCCAACAGAAACGTTGGTATACCCTCACTCCTCTCCATAAGAGACCTCGCTCCAGCCTCACATCTGTCCAGCAGAGCTGTCAGGCAGCCCTCTTGGAAGAAAGGCTCGGCTCCTAGAGTACCTACCAGGAAAGAGGCATCCGATTTCCACGGGAGGACTCCACCGGTGTTTCCCTACGCATGCGTACTCTGTGAAATCACGGTCCTCTCTGACAAG
Seq C2 exon
GACTGGTCTGTGCATATAAATGGACCCCAACACGCTAATAGTCAACTCAGTCTTGTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001162_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]