DreINT0093705 @ danRer10
Intron Retention
Gene
ENSDARG00000001162 | matr3l1.1
Description
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
Coordinates
chr14:24778660-24781335:-
Coord C1 exon
chr14:24781239-24781335
Coord A exon
chr14:24778722-24781238
Coord C2 exon
chr14:24778660-24778721
Length
2517 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGATGTTATTTGTGTTTTAGGAC
3' ss Score
9.35
Exon sequences
Seq C1 exon
AGCTTCCGGTTGAAAAGCAGGACAAGGAGAACGGTCTTCGCCAGAACCGCTGCTTTACCGATCTTCGTTGATTAATTCTTTATTCTGTCTTGCGTTG
Seq A exon
GTGAGTTATGTTTAGCAATACCAAAATATTAAATTTAGTCATTACGTTATATCTGTATTTTAACAATGCGTCAGATCAAGTCGATAAATGATCGGGAAAATGGCAGCTAACGTTAGGTCCAAGGCCAAACACAATAGATTCCCCATTTCTGCACAACATCCTCTTTACATCCACCTTTTAATCAAATTTCACTCTTACTGAAATATGTTTTATGAAATGTTATTAGATTATAACCTTACATAAAATATCCAGTTTCATTTATTTGTTATGTTTTTGTATGCATGTTAAACGAAAGTAAAAGCGAAGCACGAAAGGTAAATATTTAATTAAAGCTTATTTTGTGTAAATTGTGGCTTTAAATAAAAAAAAGTAAATCTATCGAAAATTACTTAACCAGTTTATCAACGAACTAATTATATTGATTTTGCTGGCTGTGATGTTACGGACTTGATTCAGCTAGTTTTATATGACAAATCGTGAAACATCCACAAAGTGAATTATATGATTTTTCATCTCAAGGTAAGGCTGATACAGGTGATACACCTCAACGGATTCATCCGCAGATCTTCCACCTTAAGCTGATCACTTCAACATTTTACAATACATTTATGAAGATCAAATTCTCTTCAACATCTTTTTAACAGGTTAACAACAAAGACTGCTAATTTTGGCAGGACCTAAAAGGTCCAACACGACTGTGCACAATGTCTTATAATCCACCATACCGAAACCCTCAAGGGGACAAAGATGCACGAATCTATACCCGGGACTCGAGCGCTTACAGGTCAGGAATTAGGAGCACAACTCCGCACCGGACATCTTCATCCTCATCAGAACAGCCCGTATTCCCGCCGAATAAGGCATTGTCCTTTCTGCATAGCTGCGGACTGGATGCTGAAGATCTTCAAACTCTGGCCAAGCTTCCCGAGCATCTCATCACAACCGATACCCTTCCTGACCTTCTCACAGAAATCAAAAAGAAGAAATTGTCCCACACTTCTTCACCCAGGTCCAGTGTGCTCCCAGCCGCGTCGTCAGCTCGCTCCTGGGACGATAGGAGCCACGCTCAGTCGGTTGAGTATCCTTTAGATTTGCCTGCCCGTCAGTCGTATTCCCTTAATCGAGAGCAAGCCCAAACCTGGGATGACAACTGGGGAGATGTCCAGCAAACAAGCTCTCCAGCAGCATCAAGCTACGTTGTTGAGTATAACCATCTGAAAGAGAAAAAGTCATACTATGATGAACCGTCTTATCCCCCAGAACCATCAAGAGAAATGTCTTACTCTAACTATGGCAAAGAAGTTGGTCACTCGTCGCATTTTTCCAGCAGAGACGCCAGTCATTCCTCACATCTGTCCAGTAGGGACAGTCAATCCTCACGTCGGTCAAGCAGAGACCTCGGTCAGACCTCACAGCACTCCAGCAGATACATCAGTCAGTCCTCAGTACGGTCGAGTAGAGACGTCGCTCCATCCTCACACCTGTCTAGCAGAGATGTCGGAGTACATTCACACATCGCCCAACCTTCGCCCATGTCCAACAGAAACGTTGGTATACCCTCACTCCTCTCCATAAGAGACCTCGCTCCAGCCTCACATCTGTCCAGCAGAGCTGTCAGGCAGCCCTCTTGGAAGAAAGGCTCGGCTCCTAGAGTACCTACCAGGAAAGAGGCATCCGATTTCCACGGGAGGACTCCACCGGTGTTTCCCTACGCATGCGTACTCTGTGAAATCACGGTCCTCTCTGACAAGGTAAGTAGCTTTTCGCTCTCACAGATTCTACATTACCAGCTATTTACCAGACAGTTTCAGGCATAATACACATGAGCGCACTGTGGCTTATGAGGTAAGTCTATGTATCATGTTTATTAACAGTGGAATTTGTGCGGTAAAGGGAGAGTTCAACCCAAAATGAAAATCCATCATCATGATGTACCAACACAAAAAGTTACACGAAAGTAGCCCACTTAAGTTAAACATATCCTCATCCTTCTGCAATAACCCTCAAATCTCTTTCTGGTAAATTTGCTGCATCATGATTGGTCATGAAATACGCAAGAATCAACAGAGACACCAATGGCAGACTGGCTTTGATGCTTCATGACACAGCTTTTTTGAATATATACCTCAATAAATGAGATTTTAGAGTTATAGTTTAAGGGAAGATTATGGCAATTATTTTTTGATATGAAGTTTGTCTTTATTTGTCCAATTCCAAGAGAACACTCAAAATTCACATTTGGTTGAATATGCAGTTGAAAGTATTAAGATTTATTTATTTTTTTCTCCACTGGTGGAAAAACTGTTCATCTTAACCATATATATGACTATTTGTTAAGACTCCCATTTTTAAAAGTCACTCTACAATATGGACACACTATTGCTGTAAATGTTGTCAAATAAATTTCACATATATATATATATATATATATATATATATATATAAATATATATAAATAAAATAAGTTATCTAGGATGAGTTCTGAATAGATGGTGAGAGATGTTATTTGTGTTTTAG
Seq C2 exon
GACTGGTCTGTGCATATAAATGGACCCCAACACGCTAATAGTCAACTCAGTCTTGTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001162:ENSDART00000135004:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]