DreEX0045926 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21208591-21210451:-
Coord C1 exon
chr23:21210323-21210451
Coord A exon
chr23:21210120-21210251
Coord C2 exon
chr23:21208591-21208719
Length
132 bp
Sequences
Splice sites
3' ss Seq
GATTGTGTTGTGCCCTGCAGTGT
3' ss Score
7.92
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
TTTGTTTACCTGGTTCCTATGGGAAGCGTTGTGCTCATCGATGCCAGTGTCCTCATGGAACCTCCTGTAACCATGTGACTGGACAGTGTGGTTGCCCAGCGGGATTAACTGGTAGTGGCTGTGAGCGAA
Seq A exon
TGTGCCAGTCAGGTACGTTTGGGGTAAACTGTAATCAGGTGTGCCAGTGCTCTGAGCTCAACCAGCTCTGCCACCCCGTCACTGGTGTCTGTTACTGTGCTCCCGGATACTATGGCAGCAAGTGTGAAACAG
Seq C2 exon
AATGTGAAGCGGGCCGTTATGGACCCAACTGTGAGCAGGAATGCCAGTGTCTGAATAACGGTGTATGTAAAAGCAGCACTGGCACCTGCAGCTGCCCACCGGGATTCATCGGACCAAACTGCAACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'30-26,'30-25,31-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
PF0005319=Laminin_EGF=PU(67.3=77.8)
C2:
PF0005319=Laminin_EGF=PD(30.8=36.4),PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGGGAAGCGTTGTGC
R:
TGATGTTGCAGTTTGGTCCGA
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]