DreEX0046146 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3549931-3553140:+
Coord C1 exon
chr9:3549931-3550022
Coord A exon
chr9:3552744-3552976
Coord C2 exon
chr9:3553091-3553140
Length
233 bp
Sequences
Splice sites
3' ss Seq
CTTGTTGTTTGTCCCATCAGCCA
3' ss Score
6.2
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GGATCATGTGCAGTGGACTGAAGAGGAGAGAGAGAAAGCCCGACAGAAGGCAGAAGAAAACTCTGAAGAGAAGATTCCTGTCGAAGAGCAGT
Seq A exon
CCAAATATGACAGAGAAGCTCATAAATACTGGGACCAGTTTTACGAGATGCACCAGAACAAATTCTTCAGGAACCGAAATTGGCTCTTCACTGAATTCCCGGAGCTTCTCCCTCCAGACACGGGCGGGATGTTAATGGCGGAGCAGGAGCAAGGCTTAGAGTCAGTGAACAGAGAAAAGCACGATTATAAGGACACATACCCTGGACATCATGCTGCTTTTAGGATACTAGAG
Seq C2 exon
GTGGGCTGTGGTGCAGGTAACAGCGTGTTTCCCATCATCAACACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359-'4-8,'4-6,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.218 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(32.1=96.2)
C2:
PF134891=Methyltransf_23=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCATGTGCAGTGGACTGA
R:
TGATGGTGTTGATGATGGGAAACA
Band lengths:
141-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]