MmuEX0028742 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104988090-104991810:+
Coord C1 exon
chr11:104988090-104988181
Coord A exon
chr11:104990055-104990389
Coord C2 exon
chr11:104991761-104991810
Length
335 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTAAATGTTTGCAGTTG
3' ss Score
7.26
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
Seq A exon
TTGATTATGAAGTCAATGCCCATAAATACTGGGATGACTTCTACAGAATCCATGAAAATGGGTTTTTCAAGGATAGACACTGGCTTTTTACTGAGTTCCCTGAATTGGCACCTAGCCACAGTCACCTGACGGGTGTACCCTTGGAGAAGCAGAGGAGTGACGTCTGTGAGGACGGACCTGGCTTGACAGCAGAACAGCACAAGTGTTCTTGTGCCAGCCCTGGATGTGAGACTCAGGTGCCTCCCTTGGAAGAGCCAGTGACTCAGAAGCTCGGTCACCTAGAAATTAGTGGTGAGGAATTTCCTGGCTCCTCTGCCACCTACCGAATACTTGAG
Seq C2 exon
GTTGGTTGTGGTGTAGGAAACACAGTCTTTCCAATTTTACAAACTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(15.0=25.0)
C2:
PF134891=Methyltransf_23=FE(8.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: