DreEX6016085 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19523727-19526927:+
Coord C1 exon
chr3:19523727-19523815
Coord A exon
chr3:19524578-19524819
Coord C2 exon
chr3:19526878-19526927
Length
242 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTCTCTATTTCTAGAGG
3' ss Score
8.64
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAG
Seq A exon
AGGAGTTTGACGACAGGGCCAATGAATACTGGAATGACTTTTACACCATTCACGAGAACCGCTTCTTCAAGGATCGTCACTGGCTCTTTACAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAG
Seq C2 exon
GTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'3-4,'3-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.407 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(21.3=53.1)
C2:
PF082427=Methyltransf_12=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGTGGTCAGCAGAACA
R:
TGTTGGTTTTTAAGATGGGAAAGACT
Band lengths:
132-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]