BtaEX6089438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47512685-47515953:+
Coord C1 exon
chr19:47512685-47512776
Coord A exon
chr19:47514461-47514816
Coord C2 exon
chr19:47515904-47515953
Length
356 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTAAATATTTACAGCTG
3' ss Score
8.06
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGACAACGTGGAGTGGTCGGAGGAGCAGGCCGCGGAGGCAGAAAGGAAAGTCCAGGAGAACAGCACTCAGCGGGTGTGCCAGGAGAAGCAAG
Seq A exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
Seq C2 exon
GTTGGTTGTGGTGTGGGAAACACAGTCTTCCCAATTCTACAAACTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458-'1-4,'1-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(15.4=24.4)
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Skipping Isoform:
ENSBTAT00000012443fB4227
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]