GgaEX6027258 @ galGal3
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2240394-2245435:+
Coord C1 exon
chr27:2240394-2240485
Coord A exon
chr27:2243672-2244024
Coord C2 exon
chr27:2245386-2245435
Length
353 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTGTGTTTACAGAAG
3' ss Score
8.23
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGATAATGTGGAATGGTCAGAAGAGCAGGAAGCCACTGCCAAGAGTAAAGTTCAAGAGAACAGCTCACAGCTATTGCCACAAGATAAACAAG
Seq A exon
AAGAATATGAGGTGAATGCTAAGAGATACTGGGATGACTTTTATAAAATCCATGAAAATGGCTTCTTCAAGGACAGGCACTGGCTGTTCACTGAATTTCCTGAGCTGGCACCAAATAGGAACCCAAGTCAAAATGAGGATTCTCTGTGTGAATTTAGCTGCAAAGAGGTATCCAAAAATGAAGGGCTGGGAAGCTGTGAAAATGGACATTGCACGTTAGAAAACAGAGCAGAGAATCAGCTGAACCTGCTAAAAAGCAGTCCTAGGTTCTGTACAGAAGAGCTGGCTCCACAGAAGCTGAAACAAAGTTATGAAGATTACCCAGGATCCTCTGCTTCTTACCGTATATTAGAG
Seq C2 exon
GTTGGCTGTGGTGCTGGAAATACAGTCTTCCCAATTTTACAAACCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'4-5,'4-2,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134891=Methyltransf_23=PU(16.8=27.1)
C2:
PF082427=Methyltransf_12=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]