DreEX0046351 @ danRer10
Exon Skipping
Gene
ENSDARG00000075963 | mhc1uba
Description
major histocompatibility complex class I UBA [Source:ZFIN;Acc:ZDB-GENE-990415-145]
Coordinates
chr19:7155035-7180272:+
Coord C1 exon
chr19:7155035-7155295
Coord A exon
chr19:7178393-7178668
Coord C2 exon
chr19:7179979-7180272
Length
276 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTGTCTTTGCTCAGGTG
3' ss Score
8.94
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAACCCACAGCTGGAAAGCCTATTACACTGGAACAACTGGGTTGACTGAGTTTCCAGAGTTTGTGGCACTGAATCTCATAGATGATCAGTTGATGGGGTACTTCGACAGCAAGACCAACCGCTTTAAGAGCCAATTCCAGTGGATGGAAGATAATCTCGGGAAAGAATATGATGAGCAACAAACTAACATTCTACTGGGCTATCCTGAAGTATTCAAGAACAACATTAAAGTTGTGATGGAGCGCTTCAACCAAACACAAG
Seq A exon
GTGTTCACACCTTCCAGTTCATGTACGGCTGTGAGATGGATGATGATGGCAACAAACAAGTACATTGGCAGATTGGCTATGATGGAGAGGACTTCATCAGTTTGGATAAAAAAACGCTCACCTGGACTGCTGCTAATTCTCAAGCTATGACTACCAAGGTTAAATGGGATTCCACTGGAGCAGAGGCAAATTACTGGAAAGGATATCTGGAGAATGAATGCATTGAGTGGGTGCAGAAGTATGTGGGCTATGGGAAGGACACTTTGGAGAGAAAAG
Seq C2 exon
TCTCTCCTCAGGTGTCTCTGCTGCAGAAATCTTCTTCTTCTCCAGTCGTGTGTCATGTTACAGGCTTTTACCCCAGTGGTTTAAAGATCTCCTGGCAGAGAAACGGACAAGATCATGATGAGGATGTGGAGCTTGGTGAACTTATCCCAAATGAGGACGGAACCTACCAGAGAACGAGCACTCTGAATGTTAAACCTGAAGAGTGGAAGAAGGACAAGTTCAGCTGTGTGGTGGAGCATCAGAGCAAAACTATCAACAGTATTCTCACTGAAGACGAAATCAGAACTAACAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075963-'1-7,'1-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
PF0012913=MHC_I=PD(50.0=94.6)
C2:
PF0765410=C1-set=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTACTTCGACAGCAAGA
R:
TCACCAAGCTCCACATCCTCA
Band lengths:
307-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]