MmuEX0022301 @ mm10
Exon Skipping
Gene
ENSMUSG00000053835 | H2-T24
Description
histocompatibility 2, T region locus 24 [Source:MGI Symbol;Acc:MGI:95958]
Coordinates
chr17:36005695-36017537:-
Coord C1 exon
chr17:36017241-36017537
Coord A exon
chr17:36015384-36015656
Coord C2 exon
chr17:36005695-36006789
Length
273 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCCGGGGCTTCTAGGCC
3' ss Score
6.91
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGTCGCACTCTCTGCATTACTGTTACTCAGCTGTGACTGAGCCGGGCCCGGGAGTTCCTTCATTTTTCGCCAGTGGCTTCTTAGATAACCAGCCCTTCATCCACTACGACAGCAGGAGCATGAAGGCAGAGCCTTGTGCTGACTGGCTGAGGGAAAATGCACAGTACTTCACTCATGAGACTGAGGTTTTCACCAATCGGATGAAGATTTTCCAGTTGAGCCTGAGAAACATTCGGCAATACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAG
Seq A exon
GCCCTCACACCCTCCAGTTCACATACGGCTGTGAGATGCGGTACAACAGGACCACAGGGCATTGGCAGTATGGCTACGATGGCAGTGATTACCTGACCTTGGACTTGGGCTCTATGCAATATATAGCAGCCACCTTCATTGCTGGCTACACCAAGCGCAAGTGGGAAAACAATGAGTACTGGCTGGAGAAAGAGAAGACCTACTTGGAGAAGGAGTGCATCCTATGGCTGCAGAGATACTTAACCATGGGAGGAAAGAACTTTACCCGAACTG
Seq C2 exon
GTCAGAAGAAAGAACTGGCCTGCTCCATCTGTTCCTGAAGAAGAGAGGCTCTAGGACAGGACCCAGGGACAATGTAAATAGTTTACAGCTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCTACGCTTGCTTATATTGTGTAAGGCTTGCTGCTCTTTTTTTTTTTTTTTTAAGATTTATTTATTTATCTACTATATATAAGTACACTGTCGCTGTCCTCATACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053835_MULTIEX1-2/4=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.022 C2=0.571
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(52.9=99.0)
A:
PF0012913=MHC_I=PD(46.5=94.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGCTGAGGGAAAATGCA
R:
CCCAGGCTCTTCACTGAAACC
Band lengths:
303-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types