BtaEX0001217 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility complex, class I (LOC512672), mRNA. [Source:RefSeq mRNA;Acc:NM_001076841]
Coordinates
chr23:28302427-28306069:+
Coord C1 exon
chr23:28302427-28302723
Coord A exon
chr23:28304695-28304752
Coord C2 exon
chr23:28305794-28306069
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCTGGGGCTGGGCAGGCC
3' ss Score
4.96
5' ss Seq
CACGTGGCA
5' ss Score
-7.29
Exon sequences
Seq C1 exon
GATCACACTCTCTGCAGTATTTCTACTCAGTTGTGTCTGAACCGGGTCCAGGAGTCCCTTCATTTATGGCTTTTGGCTTCGTGGACAACCAGCCCTTCATTCGCTATGACAGTGAAGAGATGAAGGCAAAGTCTTGTGTTCATTGGTTGAGGGAGGAGCCAAGTTACTTTGATGATGAGACCAAGATCTTCACAAGTCGGATGAAGATTTTCCACTTAAATCTGAGGAATGTACAGCAATATTACAACCAAACCAAGGAGGATGGTCTGAACAGAGCGCTGGCACAAAAGCAAACAA
Seq A exon
GCCCCCACACCCTCCAGTTCACCTACGGCTGTGAGCTCCTGGAGGACGGCAGGACCAC
Seq C2 exon
AGCCTCCCAAAACACACATGACTCATCACCGCATCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGAAGATCTCACTGACCTGGCAGCGCAATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGACCTTCAGGAGACGGAACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAAATACACGTGCCGTGTGCAGCATGAGGGGCTTCAGGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038619_MULTIEX1-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.022 C2=0.194
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(52.7=99.0)
A:
PF0012913=MHC_I=PD(46.8=94.6)
C2:
PF0765410=C1-set=WD(100=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAAACCAAGGAGGATGG
R:
GATCTTCGCAGGGTAGAAGCC
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development