MmuEX0022303 @ mm10
Exon Skipping
Gene
ENSMUSG00000053835 | H2-T24
Description
histocompatibility 2, T region locus 24 [Source:MGI Symbol;Acc:MGI:95958]
Coordinates
chr17:36005695-36015075:-
Coord C1 exon
chr17:36014800-36015075
Coord A exon
chr17:36014557-36014696
Coord C2 exon
chr17:36005695-36006789
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTCCCTTCCCAGAGC
3' ss Score
11.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACCCTCCAAAGACAACAGTGACTCATCAGTTCAAACCTAAAGAAAACGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGAGAGGAGCTGACCCAGGACACGGAGCTTGTGGAGACGAGGCCTTCAGGGGATGGGACATTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGTCATGTGCAACATGAGGCACTAACGCAGCCCCTTGTTCTGAAATGGG
Seq A exon
AGCCTCTTCAGCTCACCACGCCCACGACAGGAGTATATGCTAGGGGAAGCTGTAGTCCTCAAGCAACCTTGCTGAGTGTCCTTGCGTTTCCTTTATTTGGCATAGTACTTGTGTTTGGACTTACCCGCTACAAAACTCAG
Seq C2 exon
GTCAGAAGAAAGAACTGGCCTGCTCCATCTGTTCCTGAAGAAGAGAGGCTCTAGGACAGGACCCAGGGACAATGTAAATAGTTTACAGCTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCTACGCTTGCTTATATTGTGTAAGGCTTGCTGCTCTTTTTTTTTTTTTTTTAAGATTTATTTATTTATCTACTATATATAAGTACACTGTCGCTGTCCTCATACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053835_MULTIEX1-4/4=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=92.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATTCCAGAAGTGGGCAG
R:
CCCAGGCTCTTCACTGAAACC
Band lengths:
254-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types