BtaEX0001218 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility complex, class I (LOC512672), mRNA. [Source:RefSeq mRNA;Acc:NM_001076841]
Coordinates
chr23:28305794-28306731:+
Coord C1 exon
chr23:28305794-28306069
Coord A exon
chr23:28306186-28306281
Coord C2 exon
chr23:28306681-28306731
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCCTTTCTTCCACAGAAC
3' ss Score
13.15
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGCCTCCCAAAACACACATGACTCATCACCGCATCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGAAGATCTCACTGACCTGGCAGCGCAATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGACCTTCAGGAGACGGAACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAAATACACGTGCCGTGTGCAGCATGAGGGGCTTCAGGAGCCCCTCACCCTGAGATGGG
Seq A exon
AACCTCTGAAGACCTCCGTCCCCATCACAGGCATCATTGTTGTCCTGGTTCTCCTCGTGGTCACTAGAGCTGTGATCTGGATAAAGAAGCTCTCAG
Seq C2 exon
GATATTATCACTCTACAAATGGAAAAAATAGAACCTACTTTCAGACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038619_MULTIEX1-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=91.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGACCTTCAGGAGACG
R:
TTGCAGTCTGAAAGTAGGTTCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development