DreEX0046787 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17021668-17036418:+
Coord C1 exon
chr24:17021668-17021761
Coord A exon
chr24:17030102-17030197
Coord C2 exon
chr24:17032679-17036418
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATTTGTGTTTTCATGACAGAAG
3' ss Score
6.46
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGCTCAGTTAGCTGGGTTGTTGTGTGAAGAACAGGGTTCAGATGCTGATAATGTGAAATACTGTGGATACTGCAAGTACCATTACAACAAACTG
Seq A exon
AAGCATAAAGAAAGAGATCGGCATAAACCAAAGCACAAAAAGCCTTTGGAACTGTCGCCTTCCCTGGTGCCAGCGCTGATGGTGACACCTGAAAAG
Seq C2 exon
AGTTACAACAACAGCAGCAGTGGCGGAAGTGTGTCGTCCATCTCCTCCACTCAGAAGCGACTGGACGACAGCGGAGCCCGTTTCACCAATGCCAACTTTCAGGAAGTTCCACCTCACTCCAGTTCCAGTTCCAAAGATGGTGGCTCCTCTGATGGCAAGAGCTCGGACAGCAAAAGCAAGAAATCCAGTCACAGCACTAGCTCAAGCTCGGGTTCACGGGGTCGCAAATCTGTGGCAGGCAAACCCCACGGCCCTGTGGTCACCACAGCTACTTCATCCACGGCCCCTTCCTCAACAAGTCCTTTTCAGCAAGGTGAGGCTTCCAAACATGCCAACTTCACTTCATCAACAATCTGAAATGAAATTAGTAAACACCCTCTCCATGTTTCTAAATAGACTGAAACAGCCAGATTCAGGTCTCTTAGAGTGAGTCTGTTGTGACATGGCTGGATGGAAGCCAGGAGTTGTAAGCTTGGCGTGTGTGTGCGATAAGGCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_MULTIEX1-7/7=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.969 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF0465211=DUF605=FE(16.6=100)
A:
PF0465211=DUF605=FE(16.6=100)
C2:
PF0465211=DUF605=PD(62.0=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGTTGTTGTGTGAAGA
R:
AGTTGGCATTGGTGAAACGGG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]