DreEX0046786 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17021668-17030197:+
Coord C1 exon
chr24:17021668-17021761
Coord A exon
chr24:17026085-17026174
Coord C2 exon
chr24:17030102-17030197
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTTTCACCTTTTAGAGA
3' ss Score
9.63
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGCTCAGTTAGCTGGGTTGTTGTGTGAAGAACAGGGTTCAGATGCTGATAATGTGAAATACTGTGGATACTGCAAGTACCATTACAACAAACTG
Seq A exon
AGAAGGAGCAAAGGCCGTGGTAGTAGGGCTCAAAGCTTAAGTGATTCTTCTACTCACTCTTTGGATAAGCACCATGACAAGGAAAAGAAG
Seq C2 exon
AAGCATAAAGAAAGAGATCGGCATAAACCAAAGCACAAAAAGCCTTTGGAACTGTCGCCTTCCCTGGTGCCAGCGCTGATGGTGACACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_MULTIEX1-6/7=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.900 C2=0.969
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF0465211=DUF605=FE(16.6=100)
A:
NO
C2:
PF0465211=DUF605=FE(16.6=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGTTGTTGTGTGAAGA
R:
TTTCAGGTGTCACCATCAGCG
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]