RnoEX0054830 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84901700-84922765:+
Coord C1 exon
chr17:84901700-84901793
Coord A exon
chr17:84904260-84904355
Coord C2 exon
chr17:84922670-84922765
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTATATATTTTCTTTTTTAGAAA
3' ss Score
9.96
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGCTCAGTTTGCCGGGCTGCTTTGTGAAGAAGAAGGGAATGGCGCGGACAACGTCCAGTACTGTGGCTACTGTAAATACCACTTTAGTAAGCTG
Seq A exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACCAAAACACAAGAAGCAACCCGAGCCATCACCCGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'17-23,'17-13,19-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.844 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCCGGGCTGCTTTG
R:
TCAAAGAAGGAACCAAGGCGG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]