BtaEX6064047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23119384-23149783:+
Coord C1 exon
chr13:23119384-23119477
Coord A exon
chr13:23121403-23121498
Coord C2 exon
chr13:23149688-23149783
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATATATATTTTCTCTTTTAGAAA
3' ss Score
10.3
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCAGATAACGTCCAATATTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq A exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACAAAAACATAAGAAGCAACCAGAACCATCACCTGCATTGGTTCCTTCCTTGACTGTTACTACAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'22-14,'22-11,23-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.781 C2=0.812
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTTTGCCGGACTGCTTT
R:
AGGAAGGAACCAATGCAGGTG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]