GgaEX0011297 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17898543-17910470:-
Coord C1 exon
chr2:17910377-17910470
Coord A exon
chr2:17908236-17908331
Coord C2 exon
chr2:17898543-17898638
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTTCTCTTTTTAGAAA
3' ss Score
9.89
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGCACAGTTTGCAGGACTTCTTTGTGAAGAAGAAGGCAATGGTGCAGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq A exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAGGAGAAAAAA
Seq C2 exon
AAATATAAAGAGAAAGATAAACACAAGCAAAAATATAAGAAGCAGTCGGAGTCCTCACCGTCCTTGGTTCCATCTCTTACTGTAACTACAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX1-6/21=5-7
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.812 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTTTGCAGGACTTCTTTGTG
R:
AGATGGAACCAAGGACGGTGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event