RnoEX0054840 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84904260-84922765:+
Coord C1 exon
chr17:84904260-84904355
Coord A exon
chr17:84909969-84909971
Coord C2 exon
chr17:84922670-84922765
Length
3 bp
Sequences
Splice sites
3' ss Seq
ATTAATGCTATGTTTCAAAGAAA
3' ss Score
2.29
5' ss Seq
AAAGTCCCA
5' ss Score
-15.4
Exon sequences
Seq C1 exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA
Seq A exon
AAA
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACCAAAACACAAGAAGCAACCCGAGCCATCACCCGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000034157fB8800
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCTTCCTCTCACTCTCAGGA
R:
GCTCGGGTTGCTTCTTGTGTT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]