RnoEX0054852 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84900262-84922765:+
Coord C1 exon
chr17:84900262-84900365
Coord A exon
chr17:84901700-84901793
Coord C2 exon
chr17:84922670-84922765
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCTTGGCGTTGATTTTGCAGTGC
3' ss Score
7.07
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTTGCTACATATGTGATGAGCAAGGACGAGAGAGCAAAGCGGCCACTGGCGCCTGCATGACATGCAATAAACATGGATGTCGACAGGCCTTCCATGTAACATG
Seq A exon
TGCTCAGTTTGCCGGGCTGCTTTGTGAAGAAGAAGGGAATGGCGCGGACAACGTCCAGTACTGTGGCTACTGTAAATACCACTTTAGTAAGCTG
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACCAAAACACAAGAAGCAACCCGAGCCATCACCCGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249_MULTIEX1-7/13=6-9
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCAAGGACGAGAGAGCA
R:
TCAAAGAAGGAACCAAGGCGG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]