GgaEX0028342 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17866875-17881371:-
Coord C1 exon
chr2:17881268-17881371
Coord A exon
chr2:17878709-17878802
Coord C2 exon
chr2:17866875-17866970
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGGTTTGTTTCTAGTGC
3' ss Score
6.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTTGCTATATCTGTGATGAACAAGGCAGAGAAAGTAAAGCAGCCACTGGTGCATGCATGACATGTAATAAACACGGATGTCGACAAGCTTTTCATGTAACATG
Seq A exon
TGCACAGTTTGCAGGACTTCTTTGTGAAGAAGAAGGCAATGGTGCAGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq C2 exon
AAATATAAAGAGAAAGATAAACACAAGCAAAAATATAAGAAGCAGTCGGAGTCCTCACCGTCCTTGGTTCCATCTCTTACTGTAACTACAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928_MULTIEX2-6/14=5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATGAACAAGGCAGAGA
R:
AGATGGAACCAAGGACGGTGA
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]