BtaEX6064048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23117087-23121498:+
Coord C1 exon
chr13:23117087-23117190
Coord A exon
chr13:23119384-23119477
Coord C2 exon
chr13:23121403-23121498
Length
94 bp
Sequences
Splice sites
3' ss Seq
TACTTGGCTTTTATTTTCAGTGC
3' ss Score
7.33
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTTGCTATATTTGTGATGAACAAGGAAGAGAAAGCAAAGCAGCCACTGGTGCTTGCATGACATGTAATAAACATGGATGTCGACAAGCTTTCCACGTGACATG
Seq A exon
TGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCAGATAACGTCCAATATTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq C2 exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'20-11,'20-10,22-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.781
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(28.8=100)
A:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061645fB4340
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAGCAAAGCAGCCACT
R:
TCTCTTTCTCATGATGTTTATCCTGA
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]